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robust multiarray average (rma) algorithms  (Thermo Fisher)


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    Thermo Fisher robust multiarray average (rma) algorithms
    Robust Multiarray Average (Rma) Algorithms, supplied by Thermo Fisher, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/robust+multiarray+average+algorithm/pmc11409185-93-4-0
    Average 90 stars, based on 1 article reviews
    robust multiarray average (rma) algorithms - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    Microarray:

    Article Title: Transcriptional profiling reveals functional dichotomy between human slan+non-classical monocytes and myeloid dendritic cells
    Article Snippet: Subsequently, 5 mg of the resulting labeled cDNA from each sample was hybridized to Human Transcriptome Arrays 2.0 microarrays (Thermo Fisher Scientific), and signals were scanned by Affymetrix GeneChip Scanner 3000 7G (Thermo Fisher Scientific). .. Microarray signals were normalized using the robust multiarray average algorithm in the Affymetrix Expression Console software (Thermo Fisher Scientific ), and quality checks were performed. ..

    Expressing:

    Article Title: Transcriptional profiling reveals functional dichotomy between human slan+non-classical monocytes and myeloid dendritic cells
    Article Snippet: Subsequently, 5 mg of the resulting labeled cDNA from each sample was hybridized to Human Transcriptome Arrays 2.0 microarrays (Thermo Fisher Scientific), and signals were scanned by Affymetrix GeneChip Scanner 3000 7G (Thermo Fisher Scientific). .. Microarray signals were normalized using the robust multiarray average algorithm in the Affymetrix Expression Console software (Thermo Fisher Scientific ), and quality checks were performed. ..

    Article Title: Critical roles of mTORC1 signaling and metabolic reprogramming for M-CSF–mediated myelopoiesis
    Article Snippet: Immunoblots were performed as described previously , using the primary antibodies anti-CD115, anti-phosphorylated (T37/46) 4E-BP1 (236B4), anti-phosphorylated (S235/236) S6 (DX57.2.2E), anti-phosphorylated ERK1/2 (D13.14.4E ) , anti-phosphorylated (S473) AKT (D9E), anti-S6 (5G10), anti-4E-BP-1 (53H11), anti-ERK1/2 (137F5), anti Akt (polyclonal; all from Cell Signaling Technology), anti-SREBP2 (ab30682; Abcam), and anti-β-actin (AC-74; Sigma-Aldrich) and the secondary horseradish peroxidase–conjugated antibodies anti–rabbit IgG (W401B) and anti–mouse IgG (W402B; both from Promega). .. RNA samples of CMP (Lin – Sca-1 – c-Kit + CD34 + FcγRII/III mid ), GMP (Lin – Sca-1 – c-Kit + CD34 + FcγRII/III hi ) from WT and Rptor −/− , and cultures of BM Lin – cells from WT and Rptor −/− mice stimulated with M-CSF (10 ng/ml) for 12 h were analyzed with the Affymetrix Mouse Gene 2.0 ST GeneChip array, and expression signals were summarized with the robust multiarray average algorithm (Affymetrix Expression Console v1.1) or by fitting a linear model implemented in the R package “limma” ( ). ..

    Article Title: Transdiagnostic characterization of neuropsychiatric disorders by hyperexcitation-induced immaturity
    Article Snippet: All data from the Affymetrix GeneChip series were downloaded from the NCBI GEO database. .. Affymetrix Expression Console software (specifically the robust multiarray average algorithm) was used to preprocess the data. ..

    Software:

    Article Title: Transcriptional profiling reveals functional dichotomy between human slan+non-classical monocytes and myeloid dendritic cells
    Article Snippet: Subsequently, 5 mg of the resulting labeled cDNA from each sample was hybridized to Human Transcriptome Arrays 2.0 microarrays (Thermo Fisher Scientific), and signals were scanned by Affymetrix GeneChip Scanner 3000 7G (Thermo Fisher Scientific). .. Microarray signals were normalized using the robust multiarray average algorithm in the Affymetrix Expression Console software (Thermo Fisher Scientific ), and quality checks were performed. ..

    Article Title: Transdiagnostic characterization of neuropsychiatric disorders by hyperexcitation-induced immaturity
    Article Snippet: All data from the Affymetrix GeneChip series were downloaded from the NCBI GEO database. .. Affymetrix Expression Console software (specifically the robust multiarray average algorithm) was used to preprocess the data. ..

    other:

    Article Title: GalX regulates the D-galactose oxido-reductive pathway in Aspergillus niger.
    Article Snippet: Galactose catabolism in Aspergillus nidulans is regulated by at least two regulators, GalR and GalX.. In Aspergillus niger only GalX is present, and its role in D-galactose catabolism in this fungus was investigated.. Phenotypic and gene expression analysis of a wild type and a galX disruptant revealed that GalX regulates the D-galactose oxido-reductive pathway, but not the Leloir pathway in A. niger.

    Article Title: TODRA , a lncRNA at the RAD51 Locus, Is Oppositely Regulated to RAD51 , and Enhances RAD51-Dependent DSB (Double Strand Break) Repair
    Article Snippet: Raw data was analyzed using the robust multiarray average (RMA) algorithm (Affymetrix Expression Console and Partek Genomics Suite 6.4)[ ].

    Article Title: Abnormal B-cell development in TIMP-deficient bone marrow
    Article Snippet: RNA extracted from sorted B cells, stromal cells, CLPs, and Lineage − Sca-1 + c-Kit + (LSK) cells were converted into complementary DNA and subjected to Microarrays (Affymetrix oligonucleotide GeneChip Mouse Gene 2.0 ST; raw CEL files preprocessed by the robust multiarray average algorithm are available at Gene Expression Omnibus).


    Article Title: Impact of Ischemia and Procurement Conditions on Gene Expression in Renal Cell Carcinoma
    Article Snippet: Raw intensities for each probe were stored as .DAT and .CEL files by the GeneChip Operating Software v1.4 (Affymetrix Inc, Santa Clara, CA USA).



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